Neuroscience

Neuroscience is the scientific study of the nervous system. Current neuroscience is not only a branch of biology, it involves many others disciplines such as psychology, philosophy, mathematics, medicine, physics, and computer science. Current neuroscience research activities can be roughly categorized into the following major branches, including molecular and cellular neuroscience, developmental neuroscience, neural engineering, neurology, psychiatry, systems neuroscience, behavioral neuroscience, cognitive neuroscience, neuroimaging, neurolinguistics, theoretical neuroscience, and computational neuroscience, etc. Therefore, the term neurobiology is more accurate than neuroscience when refers specifically to the biology of the nervous system.

 

Axon guidance represents a key stage in the formation of neuronal network. Axons are guided by a variety of guidance factors, such as semaphorins, ephrins and netrin. Plexins function as receptors for the repulsive axonal guidance molecules semaphorins. Intracellular domains of plexins are responsible for initiating cellular signal transduction inducing axon repulsion.

Topographic arrangement of neuronal cell bodies and axonal tracts are crucial for proper wiring of the nervous system. This involves often-coordinated neuronal migration and axon guidance during development. Most neurons migrate from their birthplace to specific topographic coordinates as they adopt the final cell fates and extend axons. The axons follow temporospatial specific guidance cues to reach the appropriate targets. When neuronal or axonal migration or their coordination is disrupted, severe consequences including neurodevelopmental disorders and neurological diseases, can arise. Neuronal and axonal migration shares some molecular mechanisms, as genes originally identified as axon guidance molecules have been increasingly shown to direct both navigation processes. This review focuses on axon guidance pathways that are shown to also direct neuronal migration in the vertebrate spinal cord.

BMP Family
BMP Modulator
BAMBI  CHRDL1  Noggin/NOG  TSK
CER1  NBL1  SOST/Sclerostin 
BMP Receptor
BMPR1A/ALK-3  BMPRIB  BMPR2
BMPs (Bone Morphogenetic Proteins)
BMP10  BMP4  BMP8A  GDF-2/BMP-9 
BMP15  BMP5  BMP8B  PRCP 
BMP-2  BMP6  GDF10  smad7
BMP-3  BMP7 
Contactins
Contactin-1  TAG1/Contactin 2  Contactin 3  CNTN4 
CNTN5
Ephrins & Eph Receptors
Eph Receptor
EphA1
Ephrin
Ephrin-A1  Ephrin A4  Ephrin-B1  EFNB2A 
Ephrin A2/EFNA2  Ephrin A5  Ephrin B2  Ephrin B3
Ephrin A3 
Extracellular Matrix Molecules
AGRN  DMP1  MATN1  SOD3 
Cyclin A2/CCNA2  dermatopontin  MATN2/Matrilin 2  SPARC 
CD36  ECM1  MATN3/Matrilin 3  F-Spondin 
YKL-40/CHI3L1  EDIL3  MATN4/Matrilin 4  TGM1 
CHI3L2  EFEMP1  MEPE  Transglutaminase 2/TGM2 
YM1/Chitinase 3 Like 3  EGFL7  MFAP2  Transglutaminase 3/TGM3 
CILP  Fibulin 5  MFAP5  TGM4 
COCH  FLRT1  MIA/Melanoma Inhibitory Activity TGM7 
COL13A1  FLRT2  NID1/Entactin  Thrombospondin-1/TSP1 
COL15A1  FLRT3  Nidogen-2  THBS2 
Col1a2  Fibromodulin  NOV/CCN3  THBS3 
COL25A1  FREM1  OPTC  THBS4 
COL3A1  LAMA3  Periostin  TINAG 
COMP  LAMA4/Laminin alpha 4  PRELP  TNC 
CRTAC1  LAMB2  RSPO2  Vitronectin 
CTGF/CCN2  LAMC1  SMOC1  WISP1/CCN4
CTHRC1  LYPD3  SMOC2 
Hedgehog Family
BTRC  CDO  GPR161  PTCH1
C2CD3  DISP2 
Netrins and Receptors
DCC  NGL-1/LRRC4C  Netrin-4  UNC5C 
DSCAM  NTN1  UNC5A  UNC5D
LRRC4B  NTN3  UNC5B 
Nogo Proteins and Receptors
GPR50  MAG  RTN1  RTN4RL2 
LINGO-1  NGFR  RTN4  TROY 
LINGO2  OMGP  Nogo Receptor/RTN4R  WNK1
LINGO4  ROCK2  RTN4RL1 
Repulsive Guidance Molecules and Receptors
ARHGEF12  NTN1  RGMA  UNC5A 
ZIP Kinase/DAPK3  PTK2/FAK1  RGMB  UNC5B 
DCC  SHP2  ROCK2  UNC5C 
NR0B2  SHP-1  Src  UNC5D
Semaphorins, Plexin Receptors, and Related Molecules
ARHGEF12  TEM7  PLXND1  Semaphorin 4D 
CD72  PLXNA1  CD45  SEMA4G 
DCBLD2  PLXNA2  SEMA3A  Semaphorin 5A 
Her2/ERBB2  PLXNA3  SEMA3B  SEMA6A 
HGF  PLXNA4  SEMA3C  SEMA6B 
Integrin beta 1  PLXNB1  SEMA3E  SEMA6C 
VEGFR2/KDR  PLXNB2  SEMA4A  SEMA6D 
L1CAM  PLXNB3  Semaphorin 4B/SEMA4B  SEMA7A 
Neuropilin-1  PLXNC1  SEMA4C  TREM-2
Neuropilin-2 
Slit Ligands and ROBO Receptors
ROBO1  ROBO2  ROBO4  SLIT2 
SLIT3
SLITRK Family
SLITRK1  SLITRK2  SLITRK4  SLITRK6
Wnt Family
Wnt Inhibitors
DKK1  DKKL1  SFRP2  SOST/Sclerostin 
DKK2  FRZB  SFRP4  SOSTDC1 
DKK3  IGFBP4  sFRP-5  WIF1
DKK4  SFRP1 
Wnt Intracellular Signaling
c-Abl/ABL1  CSNK1G1  JNK1  PKC iota 
MASH1/ASCL1  CK2 alpha/CSNK2A1  JNK2  GLRX3/PRKCT 
Calmodulin 1/CALM1  Casein Kinase 2 beta  Calcineurin A/PPP3CA  PRKCZ / PKC zeta 
CAMKI  beta-Catenin  Calcineurin B/PPP3R1  Protein Kinase D2/PRKD2 
CaMKII alpha/CAMK2A  DIXDC1  PKC alpha/PRKCA  PKC nu 
CaMKII beta/CAMK2B  c-Fos  PRKCB  ROCK2 
CaMKII/CAMK2G  c-Jun  PKC delta/PRKCD  TGFB1I1 
Casein Kinase 1 alpha  JunD/Jun-D  PKC epsilon/PRKCE  Ubiquitin/UBB 
Casein Kinase 1 delta  MAP3K7/TAK1  PRKCG/PKCG  VANGL2
CSNK1E  MAPK10/JNK3 
Wnt Ligands (Wnts)
WNT10A  WNT2B  Wnt5b  WNT8A 
WNT10B  WNT3A  Wnt6  WNT8B 
WNT16  Wnt4  Wnt7a  WNT9B
Wnt2  Wnt5a 
Wnt Receptors
FZD1  Frizzled 6  LRP8/ApoER2  ROR2 
Frizzled 10  Frizzled-9/FZD9  LRPAP1  RYK 
Frizzled 2  LRP1  MUSK  ST7 
Frizzled 4  LRP10  ROR1  VANGL2
Frizzled 5  LRP11 
Wnt Signaling Modulators
Biglycan  KREMEN1  RSPO1  Syndecan-2 
DAB2  LEF1  RSPO2  Syndecan-3 
GPC2/Glypican 2  Myocilin  RSPO3  Syndecan-4 
Glypican 3  NDP/EVR2  RSPO4  SHISA4 
Glypican 6/GPC6  NEUROD1  Syndecan-1/CD138  TSPAN12

The Blood-brain barrier (BBB) is composed of a network of vessels that form a structural and chemical barrier between the brain and systemic circulation. Vessels of the BBB are composed of specialized endothelial cells that lack fenestration (pores that allow rapid exchange of molecules between vessels and tissue), have few pinocytic vesicles to minimize uptake of extracellular substances, and have extensive tight junctions that severely restrict cell permeability. Limited permeability restricts movement of substances from the systemic circulation to the brain which buffers the brain from rapid changes in ionic or metabolic conditions. Limited BBB permeability also protects the brain from exposure to molecules that are harmless to peripheral organs but toxic to neurons in the brain. BBB permeability is influenced by neurons, the extracellular matrix, and non-neuronal cells including astrocytes, pericytes, and vascular endothelial cells. These cells, along with the extracellular matrix, function as a neurovascular unit to regulate BBB permeability and maintain the integrity and function of the central nervous system.

Adhesion Molecules
Cadherin Superfamily
E-Cadherin  CDH20  DSC1  PCDH12/Protocadherin 12 
CDH10  CDH3/P cadherin  Desmocollin 2/DSC2  PCDH15 
Cadherin-11  R-Cadherin/CDH4  Desmoglein 1/DSG1  PCDH17/Protocadherin 17 
CDH12  VE-Cadherin  Desmoglein-2  PCDH18/Protocadherin 18 
H Cadherin  K Cadherin/CDH6  DSG3/Desmoglein 3  PCDH8 
M-Cadherin/CDH15  CDH7  DSG4/Desmoglein 4  PCDHA1 
Cadherin 17/CDH17  Cadherin 8  PCDH1  PCDHGC3
N Cadherin  CDHR5  PCDH10 
Claudins
Claudin-1  CLDN16  CLDN22  Claudin 5 
Claudin 10  CLDN17  CLDN23  CLDN6 
Claudin-11  Claudin18  CLDN25  Claudin 7 
CLDN12  Claudin-19  Claudin-3  CLDN8 
Claudin 14/CLDN14  Claudin 2  Claudin-4/CLDN4  CLDN9
Claudin 15  CLDN20 
Focal Adhesions
Focal Adhesion Adaptor and Scaffold Proteins
AJUBA  Kindlin-2  GRB2  NEDD9 
Caveolin-1  URP2  LIMD1  Merlin/NF2 
Crk p38  FHL2  LIMS1  PALLD 
Parvin alpha/PARVA  PXN  TGFB1I1  TLN1 
Vinculin  zyxin/ZYX LPP  GIT1 
CRKL 
Kinases Localized to Focal Adhesions
c-Abl/ABL1  PAK1  PKC alpha/PRKCA  Src
Integrin Linked Kinase/ILK  PDK1  PTK2/FAK1 
Phosphatases Localized to Focal Adhesions
INPP5D  INPPL1  Ppp2r4  SHP2
Immunoglobulin Superfamily CAMs
CD166/ALCAM  ASAM  ISLR2  MXRA8 
BCAM  Contactin-1  ICAP-1  NCAM 
BVES  TAG1/Contactin 2  JAM-2/JAM-B  NCAM2 
CADM1  Contactin 3  JAM-C  Nectin-2 
CADM2  CNTN4  JAML  NEGR1 
CADM3  CNTN5  KIRREL  Neurofascin 
CADM4  DDX11  KIRREL2  Ninjurin-1 
CD160  DSCAM  KIRREL3  Ninjurin2 
CD47  ESAM  L1CAM  Nephrin 
CDO  JAM-A/Junctional Adhesion Molecule A  LAMP3/CD208  Podocin/NPHS2 
CEACAM1  HEPACAM  LRFN1  NPTN 
CEACAM16  ICAM-1  LRFN2  OPCML 
CEACAM18  ICAM-2  LRFN3  PEAR1 
CEACAM19  CD50  LRFN4  CD31 
CEACAM20  ICAM4  LRFN5  SIRP alpha 
CEACAM21  ICAM5  LSAMP  TROP2 
CEACAM3  IGDCC3  MADCAM1  Thrombospondin-1/TSP1 
CEACAM4  IGSF11  CD146/MCAM  TMEM204 
CEACAM5  IGSF21  MDGA1  TMIGD2 
CEACAM6  IGSF3  MDGA2  UBE2S 
CEACAM7  IGSF5  MFGE8  VCAM1
CD66b  ISRL/-2 
Integrins
ITGA1/Integrin alpha 1  Integrin alpha 5/CD49e/ITGA5  LFA-1  Integrin beta 4 
ITGA10/Integrin alpha 10  ITGA6  CD11b/ITGAM/Integrin alpha M  Integrin beta 5/ITGB5 
ITGA11/Integrin alpha 11  Integrin alpha 7/ITGA7  Integrin alpha V/ITGAV  Integrin beta 6/ITGB6 
Integrin alpha 2  Integrin alpha 8/ITGA8  CD11c/ITGAX  Integrin beta 7/ITGB7 
ITGA2B/CD41  Integrin alpha 9/ITGA9  Integrin beta 1  Integrin beta 8/ITGB8 
Integrin alpha 3  CD11d/ITGAD  CD18  ITGBL1
Integrin alpha 4/CD49d/ITGA4  CD103  Integrin beta 3 
Lectins
C-type Lectin Family
Asialoglycoprotein Receptor  CLEC2A  ficolin 1/FCN1  MGL2 
Langerin/CD207  CLEC2D  Ficolin-2  MRC1/CD206 
DC-SIGN  Tetranectin  Ficolin-3  MRC2 
SIGNR1  CLEC4A  FREM1  LOX-1 
CD209G  CLEC4D  KLRB1  PLA2R1 
CD302  CLEC4F  NKG2A  REG1A 
CD72  CLEC4G/LSECtin  KLRC2  REG1B 
CD93  CD299  KLRC3  REG2 
CHODL  CLEC5A  CD94/KLRD1  Reg3A 
CLEC10A  Dectin-2  NKp80/KLRF1  REG3B 
SCGF/CLEC11A  Dectin-1  NKG2D  REG3D 
CLEC12A  COLEC11  Latexin  REG3G 
CLEC14A  COLEC12  DEC-205  REG4 
CLEC-1  DLEC1  Mannan Binding Lectin/MBL2  Surfactant protein D/SFTPD
CLEC-2  CD23 
Galectins
Galectin-1  LGALS3BP  Galectin 7  Galectin 9
Galectin-2/LGALS2  Galectin-4/LGALS4  Galectin 8/LGALS8 
Ig-type Lectins
CD22  SIGLEC1  SIGLEC14  SIGLEC7 
CD33  SIGLEC10  SIGLEC5  SIGLEC8 
CD83  SIGLEC11  SIGLEC6  SIGLEC9
MAG 
Other Lectins
ITLN1/Intelectin-1  LMAN1L
Selectins
E-Selectin  SELL/CD62L  P-Selectin
Blood-brain Barrier Transporters
ABCB1  BCRP/ABCG2  MCT1/MCTS1  SLC22A4 
ABCC1  RAGE  SLC16A2  SLCO1C1
ABCC4  LRP1 
Cytoskeletal Filaments and Associated Proteins
Intermediate Filaments
Desmin  GFAP  alpha Internexin/INA  Nestin 
Vimentin
Microfilament-associated Proteins
Iba1  COTL1  GSN/Gelsolin  PFN1/Profilin 1 
CALD1/caldesmon  HIP55/DBNL  Katanin p60  TMSB4X 
CAPG  FSCN2  MYBPC3  zyxin/ZYX
E-Cadherin 
Microtubules
Aurora A  DCTN1  Katanin p60  STMN2 
Aurora B  Dynamitin/DCTN2  Tau  beta-III Tubulin/TUBB3
Endothelial Cell Differentiation Markers
CD34  VEGFR2/KDR  S1PR1  E-Selectin 
VE-Cadherin  c-Kit  S1PR2  TIE2 
CXCR4/CD184  CD146/MCAM  S1PR3  VCAM1
FLT1  CD31  S1PR4 
Extracellular Matrix and Related Molecules
Extracellular Matrix Molecules
AGRN  DMP1  MATN1  SOD3 
Cyclin A2/CCNA2  dermatopontin  MATN2/Matrilin 2  SPARC 
CD36  ECM1  MATN3/Matrilin 3  F-Spondin 
YKL-40/CHI3L1  EDIL3  MATN4/Matrilin 4  TGM1 
CHI3L2  EFEMP1  MEPE  Transglutaminase 2/TGM2 
YM1/Chitinase 3 Like 3  EGFL7  MFAP2  Transglutaminase 3/TGM3 
CILP  Fibulin 5  MFAP5  TGM4 
COCH  FLRT1  MIA/Melanoma Inhibitory Activity  TGM7 
COL13A1  FLRT2  NID1/Entactin  Thrombospondin-1/TSP1 
COL15A1  FLRT3  Nidogen-2  THBS2 
Col1a2  Fibromodulin  NOV/CCN3  THBS3 
COL25A1  FREM1  OPTC  THBS4 
COL3A1  LAMA3  Periostin  TINAG 
COMP  LAMA4/Laminin alpha 4  PRELP  TNC 
CRTAC1  LAMB2  RSPO2  Vitronectin 
CTGF/CCN2  LAMC1  SMOC1  WISP1/CCN4
CTHRC1  LYPD3  SMOC2 
Hyaluronan (HA) binding Proteins
Aggrecan/ACAN  HAPLN1  HYAL4  SPAM1 
C1QBP  HAPLN4  Latexin  STAB1 
CD44  HAS3  LYVE1  TNFAIP6 
CEMIP  HYAL1  NCAN  VCAN/Versican
HABP2 
Metalloproteases and Regulators
alpha-2-macroglobulin  CNDP2  METAP1  EBP1 
A2ML1  Carboxypeptidase A  MAP1D  PAPPA 
ACE  Carboxypeptidase A2  methionyl aminopeptidase 2/METAP2  PAPP-A2 
ACE2  CPA4 / Carboxypeptidase A4  CD10  PCOLCE 
Aminoacylase 1  Carboxypeptidase B1  MMP1  PGPEP1 
ADAM10  Carboxypeptidase B2  MMP-10/MMP10  PHEX 
ADAM12  Carboxypeptidase E/CPE  MMP11  PRCP 
ADAM15  Carboxypeptidase M  MMP12  QPCT 
ADAM17  Carboxypeptidase Q / PGCP  MMP13  RARRES1 
ADAM19  CPXM  MMP-14/MMP14  RARRES3 
ADAM22  DPP3  MMP-15/MT2-MMP  RECK 
ADAM28  ECE1  MMP-16  RNPEP 
ADAM8/CD156a  ECE2  MMP17  SPOCK1 
ADAM9  ECM1  MMP19  SPOCK2 
ADAMTS1  Aminopeptidase A  MMP-2  SPOCK3 
ADAMTS10  ARTS1  MMP24  STAMBP 
ADAMTS15  ERAP2  MMP25  Thimet Oligopeptidase/THOP1 
ADAMTS3  PSMA  MMP-3  TIMP-1 
ADAMTS4  Insulin-degrading enzyme  MMP7  TIMP2 
ADAMTS5  Kell/KEL  MMP-8  TIMP-3/TIMP3 
ADAMTS8  Lipocalin-2/LCN2  MMP-9  TIMP-4/TIMP4 
ADAMTSL1  LNPEP  NAALAD2  TRABD2A 
AEBP1/AE binding protein 1  Leukotriene A4 Hydrolase  NAALADL1  TRHDE 
CD13  Latexin  NAALADL2  TSPAN12 
BLMH  Meprin alpha/MEP1A  Neurolysin  XPNPEP1 
CD147  Meprin beta  NPEPPS  XPNPEP2
CNDP1 
Plasmin/Plasminogen and Kallikrein/Kinin Systems
Annexin A2/ANXA2  Kallikrein 13  Kallikrein 6  PGK1 
BDKRB1  Kallikrein 14/KLK14  Kallikrein 7/KLK7  tPA 
BDKRB2  Prostate Specific Antigen/KLK3  Kallikrein 1B/KLKB1  Urokinase/uPA 
Kallikrein 1  KLK4  Kininogen 1  uPAR/PLAUR 
Kallikrein 10/KLK10  KLK5/Kallikrein 5  NPEPPS  S100A10
Proteoglycan Regulators
ARSB  EXTL3  HS2ST1  HS6ST2 
ARSG  FAM20B  HS3ST1  HS6ST3 
ASNA1  GNS  HS3ST4  Iduronate 2 sulfatase/IDS 
CHST15  GUSB  HS3ST5  NDST1 
EXTL1  HPSE/heparanase  HS6ST1  SULF2
EXTL2 
Proteoglycans
Aggrecan/ACAN  Fibromodulin  OPTC  Syndecan-4 
AGRN  GPC2/Glypican 2  Podocan  SGCA 
Bikunin/AMBP  Glypican 3  PODXL2  SGCD 
Biglycan  Glypican 6/GPC6  PRELP  SPOCK1 
CHAD  Lumican  RNF5  SPOCK2 
CSPG5/neuroglycan C  NCAN  Syndecan-1/CD138  SPOCK3 
Epiphycan  OGN/Osteoglycin  Syndecan-2  TGFBR3 
ESM1  Osteomodulin  Syndecan-3  VCAN/Versican
Heme Metabolism
Biliverdin Reductase/BLVRA  BLVRB  HMOX1  HMOX2
POR

Neural Stem Cells (NSCs) are the most primordial and uncommitted cells of the nervous system, and are believed to give rise to the vast array of more specialized cells of the CNS and peripheral nervous system (PNS). To be considered a “neural stem cell,” in contrast to a “progenitor” cell (i.e., cells that have already become lineage committed to give rise to only one category of neural component, e.g., glial cells versus neurons), that cell must be capable of (1) generating all neural lineages (neurons, astrocytes, and oligodendrocytes) throughout the nervous system, (2) having some capacity for self-renewal, and (3) being able to give rise to cell types in addition to themselves through asymmetric cell division

Neural Stem Cell Differentiation Markers
Glial Lineage Markers
Apolipoprotein E  LINGO4  Olig2  S100B 
Carbonic anhydrase II  LRRN1  OLIG3  SLC12A3 
CD44  LRRN3  OMGP  SLC13A1 
Claudin-11  MAG  PDGFRA  SLC13A3 
CLDN12  METRNL/Meteorin‑like  PDXP  SLC1A2 
CSPG5/neuroglycan C  MIB1  PPP2CB  EAAT1/SLC1A3 
Ephrin B2  Myelin Oligodendrocyte Glycoprotein  PRG2  SLC22A1 
FABP6  Musashi 1/MSI1  PROKR2  SOX10 
FGFRL1  Nestin  RNF5  SPARCL1 
GFAP  Neurofascin  Nogo Receptor/RTN4R  TROY 
Connexin 43/GJA1  NGFR  RTN4RL1  Vimentin
LINGO-1  Olig1 
Motor Neuronal Markers
Islet1/ISL1  Islet-2/ISL2  Neurogenin-2  Olig2
Neural Crest Cell Markers
MASH1/ASCL1  NEUROG1  NOTCH1  SLUG 
BMP4  Neurogenin-2  NOTCH2  SOX10 
BMP7  Neurogenin-3  PAX3  Vimentin
Integrin alpha 4/CD49d/ITGA4  NGFR  SNAIL/SNAI1 
Neural Progenitor Cell Markers
EOMES  Inhibin beta A/Activin A  PAX6  EAAT1/SLC1A3 
BLBP  Musashi 1/MSI1  ROR2  SOX1 
GFAP  NCAM  S100B  Vimentin
ID2  Nestin 
Neuronal Lineage Markers
ACE  LHX5  NELL2  Thy1/CD90 
CD166/ALCAM  Latexin  NEUROD1  TLE3 
DLG4  MAP2  NEUROD2  beta-III Tubulin/TUBB3 
GAD67  Tau  Neuregulin-1  VAMP1 
GAD65  MSX1  alpha-Synuclein  VAMP2 
GRIN1  Neurofilament Heavy  STX1A  VAMP5 
HOXA1  NEFL/Neurofilament  Synaptophysin/SYP  VAMP7 
alpha Internexin/INA  NF-M/NEFM  Tyrosine Hydroxylase  VAMP8
L1CAM  NELL1 
Neural Stem Cell Growth Factors
Activins
Inhibin beta A/Activin A  Inhibin beta B  Inhibin beta C/INHBC
BMPs (Bone Morphogenetic Proteins)
BMP10  BMP4  BMP8A  GDF-2/BMP-9 
BMP15  BMP5  BMP8B  PRCP 
BMP-2  BMP6  GDF10  smad7
BMP-3  BMP7 
EGF Ligands
Amphiregulin  EGFL7  LRIG1  TGF-alpha 
Betacellulin  EGFL8  Neuregulin-1  Tomoregulin-1 
EGF  Epiregulin  NRG4  TMEFF2
EGFL6  HB-EGF 
FGF Ligands
FGF1  FGF16  FGF21  FGF5 
FGF10  FGF17  FGF22  FGF6 
FGF11  FGF19  FGF23  KGF/FGF-7 
FGF12  FGF20  FGF4  FGF9
GDNF Family Ligands
GDNF  NRTN/Neurturin  PSPN
Hedgehogs
DHH  IHH  Sonic Hedgehog
IGF Ligands
IGF1  IGF-II  IGFL3
TGF-beta Family Ligands
TGF beta 1  TGF beta 2  TGF-beta 3/TGFB3
Vascular Endothelial Growth Factors (VEGFs)
PLGF/PGF  VEGFA  VEGF B  VEGF C
Wnt Ligands (Wnts)
WNT10A  WNT2B  Wnt5b  WNT8A 
WNT10B  WNT3A  Wnt6  WNT8B 
WNT16  Wnt4  Wnt7a  WNT9B
Wnt2  Wnt5a 
Neural Stem Cell Markers
BCRP/ABCG2  GATA2  NOTCH1  ROR2 
MASH1/ASCL1  GFAP  NOTCH2  RUNX1 
BMI1  HOXB1  NR2F1  SFRP2 
Calcitonin receptor  ID2  GCNF/NR6A1  SLAIN1 
CDCP1  METRNL/Meteorin‑like  OTX2  BRG1 
N Cadherin  Musashi 1/MSI1  PAX3  SOX1 
beta-Catenin  MSI2  PAX6  SOX11 
CXCR4/CD184  MSX1  PDGFRA  SOX21 
FABP3  Nestin  PRKCZ / PKC zeta  SOX9 
BLBP  NEUROD1  PROKR2  Vimentin 
SSEA1  Nrf2/NFE2L2  PROM2  ZIC1
Frizzled-9/FZD9  Noggin/NOG 
Neural Stem Cell Transcription Factors
MASH1/ASCL1  MCM2  Olig2  SOX3 
ATF2  MEF2C  OLIG3  SOX5 
CSHL1  MSX1  PAX3  SOX6 
EMX2  NEUROD1  PAX6  SOX9 
FOSB  NEUROD2  PRDM16  STAT3 
GLI1  NEUROG1  PROX1  TCF12 
GLI2  Neurogenin-2  smad7  p53 
HOXB1  Nkx2.2  BRG1  ZIC1 
c-Jun  nkx6.1  SNAIL/SNAI1  ZIC3
KLF4  Olig1  SOX1 

Neurodegenerative diseases are a heterogeneous group of disorders that are characterized by the progressive degeneration of the structure and function of the central nervous system or peripheral nervous system. Common neurodegenerative diseases include Alzheimer’s disease and Parkinson’s disease.

ALS Related Molecules
AOX1/Aldehyde Oxidase  GDNF  alpha-Synuclein  TARDBP 
CHMP2B  IGF1R  SNCB  UBE2K 
CSF3R/G-CSFR  RET  SNCG  UCP1 
DCTN1  SLC1A2  SOD1  VAPB 
Dynamitin/DCTN2  EAAT1/SLC1A3  SOD2/Mn-SOD  VEGFA
Alzheimer’s Disease
Acetylcholinesterase  Caspase-3  Hsp90 alpha  PPAR gamma 
ADAM10  Caspase-6  Tau  PPARGC1A/PGC1 
ADAM17  CASP8/ALPS2B  MTOR  PSEN1 
ADAM9  Caspase-9  Nrf2/NFE2L2  PSEN2 
RAGE  GABRA1  NGF  PSENEN 
APH1A  GNRH1  PDE4A  PTGS1 
APP/Protease nexin-II  GRIN2C  PDE5A  Ppp2r4 
BACE1  mGluR5/GRM5  PLD2  SIRT2
Beclin 1/BECN1  GSK3B 
Multiple Sclerosis and Myelin Related Molecules
CIITA  IL22RA1  MAG  RARB 
PSMA  IL23 Receptor  Myelin Oligodendrocyte Glycoprotein  RARG 
GALC  IL24  Myeloperoxidase/MPO  RORC 
GATA3  IL-27  MPP5  RTN4 
GPR6  CD122/IL2RB  MPZL2  Sphingosine Kinase 1 
IFNGR1  IL-34  Merlin/NF2  TBX21 
IL10RA  IL4R  OMGP  TGF beta 1 
IL17RA  IL-6  PADI2  Thrombopoietin 
IL17RB  IL-6R  PDXP  TSLP 
IL18BP  IL-7  PRG2  TSPAN2 
IL1RAP/IL-1RAcP  Galectin-1  RARA  TSPAN3
IL21 Receptor 
Parkinson’s Disease Related Molecules
Apolipoprotein E  GLUD2  PARK7/DJ-1  TMEM106B 
Calbindin  HtrA2/Omi  PEMT  p53 
CDNF  LRRK2  PINK1  Ubiquitin/UBB 
COMT  Monoamine Oxidase A  PPP1R1B  UBE2E3 
Dopamine beta-Hydroxylase  Mitofusin 1/MFN1  RORC  UBE2K 
DDC  MFN2  SLC18A2  UBQLN1 
DRD1  Neurofilament Heavy  SLC6A3  UCHL1 
Dopamine D2 Receptor/DRD2  NEFL/Neurofilament  alpha-Synuclein  UCHL3 
DRD5  NF-M/NEFM  TGM7  ZSCAN21
GDNF  NNMT  Tyrosine Hydroxylase 

Inflammatory processes contribute to neurological disorders, and many therapeutic breakthroughs in neurological disease have been immune-targeted.Neuroinflammation refers to the inflammation of the nervous tissue, and is an immune response often initiated against a variety of harmful stimuli such as pathogens or trauma. Neuroinflammation is a complex biological response involving many signaling proteins, receptors, and cell types. Neuroinflammation stems from a combination of responses from resident glial cells in the central nervous system (CNS), which include microglia, oligodendrocytes, astrocytes, and non-glial resident myeloid cells (macrophages and dendritic cells) and peripheral leukocytes.

A neurotransmitter (NT) is a small molecule released at the presynaptic axonal membrane of one neuron into the synaptic cleft to bind with the receptors present in the postsynaptic membrane of another neuron (or muscle fiber), which results in either excitation or inhibition of the passage of signals across the synapse.

Neurotransmitter receptors are expressed on the surface of post-synaptic cells to bind ligand-specific neurotransmitters and hormones. They are also expressed on presynaptic cells to provide feedback mechanisms and attenuate excessive neurotransmitter release. The majority of neurotransmitter receptors are integral membrane proteins with seven transmembrane domains, commonly coupled to G-proteins. Binding of a ligand to its specific neurotransmitter receptor may result in the activation of a myriad of cell signal transduction pathways and modulation of ion channel homeostasis.

Calcium-binding Proteins and Related Molecules
Iba1  CAMKK1  PDP1/PDP  S100A4 
Calbindin  CAMKK2  Calcineurin A/PPP3CA  S100A6 
CALB2  CIB1  Calcineurin B/PPP3R1  Psoriasin/S100A7 
Calcitonin receptor  CLSTN1  PRKD1  S100A8 
CALD1/caldesmon  CLSTN2  Parvalbumin/PVALB  S100A9 
Calmodulin 1/CALM1  CLSTN3  S100A1  S100B 
Calreticulin  DCLK1  S100A10  S100P 
Calreticulin 3/CALR3  DOC2A  S100A11  SMOC1 
CAMKI  GPRC6A  S100A12  SMOC2 
CaMKII alpha/CAMK2A  HAX1  S100A13  Synaptotagmin 1/SYT1 
CaMKII beta/CAMK2B  NUCB2/Nucleobindin 2  S100A16  TCTP/TPT1 
CaMKII/CAMK2G  PCDH12/Protocadherin 12  S100A2  WFS1
GABA Receptors
GABARAP  GABRA4  GABA Receptor Epsilon  GABRR1 
GABARAPL1  GABRA5  GABRG1  GABRR2 
GABARAPL2  GABRA6  GABRG2  GABRR3 
GABBR1  GABRB1  GABRG3  GAD67 
GABRA1  GABRB2  GABRP/GABA A receptor pi  GAD65 
GABRA2  GABRB3  GABRQ  Gephyrin/GPHN
GABRA3  GABRD 
Glutamate Receptors
GRIK2  GRM2  GRM4  HOMER1 
HOMER2
Ion Channels and Regulators
HCN4  P2RX1  P2RX5  SLC12A5 
KCNB2  P2RX2  P2RX6  SLC12A6 
KCNC1  P2RX3  P2RX7  SLC8A1 
KCNK15  P2RX4  SLC12A4  TRPM8
ORAI1 
Neurotransmitter G Protein-Coupled Receptors
PACAP receptor/ADCYAP1R1  Dopamine D2 Receptor/DRD2  GRM2  HTR7 
ADRA2B  GPR35  GRM4  MRGPRF 
ADRB2  GPR45  HCRTR2 / OX2R  MT2A 
AGTR1/AT1  GPR61  5HT2B/HTR2B  NMUR2 
AGTR-2  GRIK2  HTR4/5-HT4  OPRL1/nociceptin receptor
CD44 
Neurotransmitter Transporters
DPP10  PANX1/Pannexin 1  EAAT1/SLC1A3  SLC6A1 
DPP6  PANX3/Pannexin 3  SLC22A1  SLC6A7
NUP85 

Neurotrophic factors are important regulators of the development and maintenance of vertebrate nervous system. During the development of the nervous system, neuronal populations undergo a process of naturally occurring cell death at a time when their axons are innervating target areas. This mechanism ensures a balance between the size of an innervating population and the size of its target territory. Nerve growth factor (NGF) was the first neurotrophic factor to be discovered. More recent work has shown that other molecules are secreted by target organs that regulate neuronal survival and differentiation. This chapter focuses on neurotrophins with brief descriptions of the actions of these other molecules.

Synaptic Proteins are a family of neuron-specific phosphoric proteins associated with synaptic vesicles. They are present on the surface of almost all synaptic particles and bind to the cytoskeleton. They can be phosphorylated by calmodulin and camp-dependent protein kinases.Human synaptic protein A1 is composed of 705 amino acid residues, and B1 is the product of variable splicing. Presynaptic receptor is a structure between neurons, collectively known as the synapse, composed of the presynaptic membrane, synaptic gap and postsynaptic membrane. The presynaptic receptor refers to a receptor in the presynaptic membrane, which is essentially a protein

Calcium-binding Proteins and Related Molecules
Iba1  CAMKK1  PDP1/PDP  S100A4 
Calbindin  CAMKK2  Calcineurin A/PPP3CA  S100A6 
CALB2  CIB1  Calcineurin B/PPP3R1  Psoriasin/S100A7 
Calcitonin receptor  CLSTN1  PRKD1  S100A8 
CALD1/caldesmon  CLSTN2  Parvalbumin/PVALB  S100A9 
Calmodulin 1/CALM1  CLSTN3  S100A1  S100B 
Calreticulin  DCLK1  S100A10  S100P 
Calreticulin 3/CALR3  DOC2A  S100A11  SMOC1 
CAMKI  GPRC6A  S100A12  SMOC2 
CaMKII alpha/CAMK2A  HAX1  S100A13  Synaptotagmin 1/SYT1 
CaMKII beta/CAMK2B  NUCB2/Nucleobindin 2  S100A16  TCTP/TPT1 
CaMKII/CAMK2G  PCDH12/Protocadherin 12  S100A2  WFS1
Contactins
Contactin-1  TAG1/Contactin 2  Contactin 3  CNTN4 
CNTN5
GABA Receptors
GABARAP  GABRA4  GABA Receptor Epsilon  GABRR1 
GABARAPL1  GABRA5  GABRG1  GABRR2 
GABARAPL2  GABRA6  GABRG2  GABRR3 
GABBR1  GABRB1  GABRG3  GAD67 
GABRA1  GABRB2  GABRP/GABA A receptor pi  GAD65 
GABRA2  GABRB3  GABRQ  Gephyrin/GPHN
GABRA3  GABRD 
Glutamate Receptors
GRIK2  GRM2  GRM4  HOMER1 
HOMER2
IGSF4/SynCAM Family
CADM1  CADM2  CADM4
Ion Channels and Regulators
HCN4  P2RX1  P2RX5  SLC12A5 
KCNB2  P2RX2  P2RX6  SLC12A6 
KCNC1  P2RX3  P2RX7  SLC8A1 
KCNK15  P2RX4  SLC12A4  TRPM8
ORAI1 
Neurexins and Neuroligins
Neuroligin 1  Neuroligin 3/NLGN3  NRXN2  NRXN3
NLGN2/Neuroligin 2  NLGN4X 
Neurotransmitter G Protein-Coupled Receptors
PACAP receptor/ADCYAP1R1  Dopamine D2 Receptor/DRD2  GRM2  HTR7 
ADRA2B  GPR35  GRM4  MRGPRF 
ADRB2  GPR45  HCRTR2 / OX2R  MT2A 
AGTR1/AT1  GPR61  5HT2B/HTR2B  NMUR2 
AGTR-2  GRIK2  HTR4/5-HT4  OPRL1/nociceptin receptor
CD44 
Neurotransmitter Transporters
DPP10  PANX1/Pannexin 1  EAAT1/SLC1A3  SLC6A1 
DPP6  PANX3/Pannexin 3  SLC22A1  SLC6A7
NUP85 
Synaptic Adhesion Molecules
CADM1  TAG1/Contactin 2  LRFN1  NPTN 
CADM2  Contactin 3  LRFN3  NRXN2 
CADM4  CNTN4  LRFN4  NRXN3 
CBLN1  CNTN5  LSAMP  OPCML 
CBLN2  DSCAM  NCAM  PCDH8 
CBLN4  Ephrin A4  NEGR1  Syndecan-2 
N Cadherin  Ephrin A5  Neuroligin 1  SLITRK1 
CLSTN1  Ephrin-B1  NLGN2/Neuroligin 2  SLITRK2 
CLSTN2  Ephrin B2  Neuroligin 3/NLGN3  SLITRK4 
CLSTN3  EPHA5  NLGN4X  SLITRK6
Contactin-1  L1CAM 
Synaptic Proteins
AGRN  HIP55/DBNL  LAMB2  SEZ6 
Amphiphysin/AMPH  DISC1  LGI2  SEZ6L2 
ARHGEF9  DLG4  LRFN1  SHANK2 
CBLN1  DLGAP1  LRFN3  SLC32A1 
CBLN2  DOC2A  LRFN4  SNAPIN 
CBLN4  DOK7  Tau  alpha-Synuclein 
N Cadherin  ELFN1  MUSK  SNCB 
CLSTN1  ELFN2  NCAM  SNCG 
CLSTN2  FRMPD4  NPTN  SYBU 
CLSTN3  FYN  NPTXR  THBS2 
CLTC  Gephyrin/GPHN  NXPH1  THBS3 
CLTCL1  GRASP  Neurexophilin-3/NXPH3  TLN2 
CNTNAP1  HOMER1  Syndecan-1/CD138  VAMP1 
CASPR2  kynureninase/KYNU  Syndecan-2  VCP
CPLX1  L1CAM 
Synaptic SNAREs
CPLX1  STX1A  Munc18c/STXBP3  UNC13B 
EEA1  STX1B  SV2C  VAMP1 
SNAP23  STX2  SYBU  VAMP2 
SNAP-25  STX4  Synapsin 1  VAMP5 
SNAP29  Syntaxin 6  Synaptophysin/SYP  VAMP7 
SNAPIN  Syntaxin 7  Synaptotagmin 1/SYT1  VAMP8 
alpha-Synuclein  Syntaxin 8  TXLNA  VAPA 
STX12  Munc18-1/STXBP1  UNC13A  VAPB
Syntaxin 16/STX16  STXBP2 

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